Microbiol. Biotechnol. Lett. 2020; 48(4): 439-446
https://doi.org/10.48022/mbl.2003.03008
Zhuang Yao 1, Yu Meng 1, Huong Giang Le 1, Se Jin Lee 1, Hye Seong Jeon 1, Ji Yeon Yoo 1, Diana Nur Afifah 3 and Jeong Hwan Kim 1, 2*
1Division of Applied Life Science (BK21 Four), Graduate School, 2Institute of Agriculture and Life Science, Gyeongsang National University, Jinju 52828, Republic of Korea 3Nutrition Science Department, Faculty of Medicine, Diponegoro University, Semarang 50275, Indonesia
Correspondence to :
Jeong Hwan Kim, jeonghkm@gsnu.ac.kr
Two Bacillus strains, K3 and K208, both demonstrating strong fibrinolytic activities were isolated from Kimchi, a traditional Korean preparation of fermented vegetables. Isolates were subjected to various molecular biology based identification methods including RAPD-PCR and identified as B. subtilis and B. velezensis, respectively. Tryptic soy broth (TSB) was found to best maintain both the growth and the fibrinolytic activity of these strains. Culture supernatants were analyzed by SDS-PAGE and fibrin zymography, and the results indicate that a 40 and 27 kDa band seem to be responsible for the fibrinolytic activities of these two isolates and the 27 kDa band was subsequently identified as the mature form of AprE, the major fibrinolytic enzyme. Thus the aprE genes were cloned and the translated amino acid sequences demonstrated 99.3% identity with each other, and 86.5% identity with BsfA, a fibrinolytic enzyme from B. subtilis ZA400 also isolated from Kimchi, and AprE2, a fibrinolytic enzyme from B. subtilis CH3-5 isolated from Cheonggukjang, a traditional Korean fermented soy. Given this B. subtilis K3 and B. velezensis K208 may be promising starter cultures in the production of fermented foods.
Keywords: Bacillus subtilis, Bacillus velezensis, fibrinolytic enzymes, aprE gene cloning
Bacilli are widely present among diverse environments including soil, water, fermented foods, and intestines of animals [1, 2]. Bacilli secrete various hydrolytic enzymes into surrounding environments, and amylases and proteases are the most important enzymes widely utilized for various industrial applications [3]. Many commercial products including fermented foods depend on the strong enzyme activities of bacilli. Bacilli play important roles during fermentation of soy products such as doenjang (fermented soy paste), ganjang (soy sauce), and cheonggukjang (fermented and boiled soy) due to their high proteolytic activities [4−6]. During fermentation, bacilli contribute to the development of unique flavor and texture of foods by producing peptides and amino acids from proteins, functional materials such as γ-PGA (polyglutamic acid) [7]. Bacilli also produce a variety of different antimicrobial compounds including antibiotics, bacteriocins, and lipopeptides, which inhibit growth of pathogens [8]. Some secreted proteases show strong fibrinolytic activities, and nattokinase and Bacillopeptidase-F (Bpr) are the enzymes with strong fibrinolytic activities and currently used as nutritional supplements or alternatives replacing drugs for treating or preventing thrombolysis caused by fibrin accumulation in blood vessels [9, 10].
Fermented foods including various
Colonies showing strong fibrinolytic activities on fibrin plates were selected and identified by molecular biological methods. 16S rRNA genes were amplified using primers: bac-F (5'-CGGCGTGCCTAATACATGCAAG-3'), and bac-R (5'-GGCATGCTG ATCCGCATTACTA-3') [12]. Primers for recA was amplified using primers: recA-F (5'-TGAGTGATCGTCAGGCAGCCTTAG-3'), and recAR (5'-CYTBRGATAAGAR TACCAWGMACCGC-3') [12]. PCR was done in 50 μl volume consisting of 2 μl of template DNA, 2 μl of primers (10 μM each), 5 μl of dNTPs (0.25 mM), and 0.5 μl of Ex
RAPD-PCR was done using S30 (5'-GTGATCGCAG- 3') primer and Go-Taq® DNA polymerase (Promega, USA) [12]. PCR was done in 30 μl volume consisting of 2 μl of template DNA, 2 μl of S30 primer (10 μM), and 15 μl of Go Taq® green master mix. PCR conditions were as follows: initial denaturation at 94℃, 5 min followed by 40 cycles consisting of denaturation at 94℃, 15 s, annealing at 32℃, 15 s, and extension at 72℃, 2 min, and final extension at 72℃, 4 min.
Bacilli isolates were grown in different culture media: LB broth, brain heart infusion (BHI, Becton, Dickinson, and Company, USA) broth, nutrient broth (NB, Neogen, USA), and tryptic soy broth (TSB, Becton, Dickinson, and Company) at 37℃ with shaking. Aliquots of culture were taken at 12 h intervals, and OD600 values were measured. Culture was centrifuged at 12,000 ×
Bacilli were isolated from various
Table 1 . Identification of K3 and K208 by 16S rRNA and
Strain | Gene | Length (bp) | Description | Identities (%) |
---|---|---|---|---|
K3 | 16S rRNA | 1,234 | 100.00 | |
recA | 763 | 99.87 | ||
99.74 | ||||
99.48 | ||||
99.21 | ||||
K208 | 16S rRNA | 1,198 | 100.00 | |
recA | 705 | 100.00 | ||
99.72 | ||||
99.29 | ||||
99.15 |
SDS-PAGE of culture supernatant of
SDS-PAGE of culture supernatant from
When translated amino acid sequences were compared with each other, 2 amino acids were different (99.3% identity). The 91th and 268th amino acid of AprEK3 were N and G whereas they were K and S for AprEK208. Amino acids constituting of the catalytic triad are conserved in AprEK3 and AprEK208, and they are Asp (32th), His (64th). and Ser (221th) (Fig. 4). When the mature AprEK3 was compared with BsfA, a fibrinolytic enzyme from
Bacilli are often isolated from
This work was supported by the Basic Science Research Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education (2017R1D1A1B03030037), and also supported by a grant 20130290 to Solar Salt Research Center of Mokpo National University from Ministry of Oceans and Fisheries of Korea. Yao Z, Meng Y, Lee SJ, and Yoo JY were supported by BK21 Plus program, MOE, Republic of Korea. Le HG and Jeon HS were supported by full-time graduate scholarship from Gyeongsang National University.
The authors have no financial conflicts of interest to declare.
Alexander A. Osmolovskiy, Elena S. Zvonareva, Nina A. Baranova, and Valeriana G. Kreyer
Microbiol. Biotechnol. Lett. 2023; 51(2): 167-173 https://doi.org/10.48022/mbl.2205.05002