Microbial Biotechnology (MB) | Cell Culture and Biomedical Engineering
Microbiol. Biotechnol. Lett. 2022; 50(3): 375-386
https://doi.org/10.48022/mbl.2205.05010
Rupali Koshti1, Ashish Jagtap1, Domnic Noronha1, Shivali Patkar1, Jennifer Nazareth1, Ruby Paulose1, Avik Chakraborty2, and Pampi Chakraborty1*
1Department of Microbiology, St. Xavier’s College (Autonomous), 5, Mahapalika Marg, Mumbai, Maharashtra, PIN: 400001, India
2Radiation Medicine Centre, Bhabha Atomic Research Centre, J. Wadia Road, Parel, Mumbai, Maharashtra, PIN: 400012, India
Correspondence to :
Pampi Chakraborty, pampi.chakraborty@xaviers.edu
In the present study, four distinctly colored bacterial isolates that show intense pigmentation upon brief ultraviolet (UV) light exposure are chosen. The strains are identified as Micrococcus luteus (Milky yellow), Cryseobacterium pallidum (Yellow), Cryseobacterium spp. (Golden yellow), and Kocuria turfanensis (Pink) based on their morphological and 16S rDNA analysis. Moderate salinity (1.25%), 25-37℃ temperature, and pH of 7.2 are found to be the most favorable conditions of growth and pigment production for all the selected isolates. The pigments are extracted using methanol: chloroform (1:1) and the purity of the pigments are confirmed by high-performance liquid chromatography (HPLC) and thin-layer chromatography (TLC). Further, Fourier transform infrared (FTIR) and UV-Visible spectroscopy indicate their resemblance with carotenoids and flexirubin family. The antioxidant activities of the pigments are estimated, and, all the pigments have shown significant antioxidant efficacy in 2,2'-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) (ABTS), 2,2-diphenyl-1-picryl-hydrazyl (DPPH), and ferric reducing antioxidant power (FRAP) assays. The UV protective property of the pigments is determined by cling-film assay, wherein, at least 25% of UV sensitive Escherichia coli survive with bio-pigments even after 90 seconds of UV exposure compared to control. The pigments also hold a good sun protective factor (SPF) value (1.5-4.9) which is calculated with the Mansur equation. Based on these results, it can be predicted that these bacterial pigments can be further developed into a promising antioxidant and UV-protectant for several biomedical applications.
Keywords: Bio-pigment, antioxidant, UV-protective pigments, carotenoids, flexirubin, SPF
Bacteria are known to be a potential source of biopigments. Due to their anti-oxidant, anti-cancer, antimicrobial, and anti-inflammatory properties, bio-pigments have emerged as pharmaceuticals since the last decade [1−3]. Several bacterial pigments are extensively studied; such as carotenoids, melanins, flavins, quinones, violacein, etc. [4−6]. Recent studies have focused on treating many diseases like cancer, leukemia, cardiovascular diseases, diabetes mellitus, neurodegenerative diseases, etc. with bio-pigments [7−11]. Carotenoids are considered to be one of the most abundant types of pigment in bacteria. They get oxidized readily and thus can prevent reactive oxygen species (ROS) formation. Carotenoids obtained from
There are several bacterial pigments and their analogs that have been screened for their antioxidant and radioprotective ability [16]. Pigments like carotenoid, naphthoquinone, and violacein have been shown to possess a potent antioxidant activity [13, 17, 18]. Studies revealed that yellow pigment called staphyloxanthin, from
Ultraviolet (UV) radiation causes adverse biological effects such as photo-aging, skin cancer, generation of ROS, and damages the DNA [21]. Excess production of ROS in the body is associated with aging and chronic cardiovascular and neurodegenerative diseases, diabetes mellitus, and kidney diseases [22]. Carotenoids and melanins offer a selective advantage to the host organisms as they shield them from UV by absorbing in the UV range and by scavenging the free radicals [23, 24]. Many synthetic UV-protective agents present in sunscreens, and also synthetic antioxidants are known to cause side effects and have safety issues [25, 26]. Hence, there is an increased interest to explore natural alternatives that are effective and safe.
Thus, in the present study, the objective is to isolate and characterize bacterial pigments from coastal soil and water samples and to monitor their antioxidant properties by 2,2'-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) (ABTS), 2,2-diphenyl-1-picryl-hydrazyl (DPPH), and ferric reducing antioxidant power (FRAP) assays.
Sample collection. The pigment-producing bacteria were screened from the water and soil samples. The samples were collected from various locations in Mumbai, India. The co-ordinates of the sample collection locations are- Dadar sea beach (DSB)- 19.020758°, 72.829176° and Napean sea Road (NSR)- 18.958871°, 72.799343°.
The pigment-producing bacteria were screened from the water and soil samples. The samples were collected from various locations in Mumbai, India. The co-ordinates of the sample collection locations are- Dadar sea beach (DSB)- 19.020758°, 72.829176° and Napean sea Road (NSR)- 18.958871°, 72.799343°.
Isolation. For isolation of the bacteria, 1 g each of the soil samples was mixed with 50 ml of saline. From this, 100 μl was added on to the nutrient agar plates (M001, Hi-Media, India), by spread plate technique, and incubated at room temperature (RT) for 48 h. After 48 h, the plates were given a 30 s UV exposure (253.7 nm) by keeping the plate 1 meter away from the UV source in the laminar airflow (ESCO, Singapore) and incubated further for 24 h at room temperature. Only the bacterial colonies that showed intense color after this exposure were selected for further study.
Identification. The cultures were identified using morphological characteristics and 16S rDNA sequencing. The DNA of these cultures was extracted using the phenol-chloroform method and the purified DNA was then subjected to a polymerase chain reaction (PCR) (ESCO Thermal cycler, Singapore) using 27f and 1492r primers [27]. The amplicon was sequenced, and then similar sequences were searched through NCBI BLAST (https://blast.ncbi.nlm.nih.gov/Blast.cgi). The sequences were aligned and a phylogenetic tree was prepared with MEGA software.
Optimization of growth conditions. Optimization of growth parameters like temperature, pH, and salt concentration was carried out simultaneously to assess the optimum growth of the bacteria. The time of UV exposure required for maximum pigment production was also determined. The nutrient broth was inoculated with respective pigment-producing isolates (0.5% v/v, 0.2 OD) and incubated at 4℃, 25℃, 37℃, and 55℃ to check its optimum temperature for growth. Similarly, nutrient broth with differing pH (3, 4, 5, 6, 7, 8, and 9) were inoculated with respective strains and incubated up to 48 h at shaking condition (200 rpm). To investigate the effect of salt concentration on bacterial growth, nutrient broth was mixed with different concentrations of NaCl (0.07%, 0.015%, 0.31%, 0.63%, 1.25%, 2.50%, 5.00%, and 10%) and inoculated with pigment-producing isolates (0.5%v/v, 0.2 OD). After 18 h of incubation at shaking conditions (200 ×
To determine the optimum time of UV exposure required for obtaining higher pigment production, the cell suspension was exposed to UV radiation (253.7 nm) for 0 s, 30 s, 60 s, 90 s, and 120 s and then incubated for 48 h at optimum growth conditions. After growth, the cell pellet was used for pigment extraction. The maximum pigment production was then determined by checking the absorbance at their respective λmax (BioTek Instruments Inc.).
Extraction of the pigments. The solvent extraction method was used for extracting the pigments [13]. The nutrient broth was inoculated with Yellow, Milky yellow, and Pink cultures. After incubation at 37℃ for 48 h, the cell pellet was isolated from bacterial suspension by centrifugation at 4000 ×
Thin-layer Chromatography (TLC) and High-performance Liquid Chromatography (HPLC). The pigments obtained after extraction were subjected to TLC and HPLC to assess its components. The pigments were spotted on a TLC plate and methanol was used as a mobile phase. After the run, the TLC plate was dried at RT and placed in an iodine chamber for the development of spots.
The chemical purity of the pigments was assessed using HPLC. The extracted pigments were dissolved in 50% dimethyl sulfoxide (DMSO) and then analyzed by HPLC using Eurosphere C-18 reversed-phase cartridge {Dimension: 300 mm (length) × 4 mm (diameter), particle size: 5 μm} in KNAUER, Germany system. The mobile phase contained Solvent A: 0.1% formic acid in HPLC water and Solvent B: 0.1% formic acid in methanol. At a flow rate of 0.5 ml/min, the elution gradient was as follows: for zero time and 2 min, 95% solvent A and 5% solvent B; for 1 min and 20 min gradient changes to 5% solvent A and 95% solvent B. The UV detector, connected in series, was set to absorbance at 255 nm. The ChromGate software was used for the analysis of the data.
UV-visible and Fourier Transform Infrared (FTIR) analysis. The dried pigments were dissolved in 1ml of 5% methanol solution (1 mg/ml) and its UV-visible absorption range was determined by performing their spectral analysis in a UV-Visible spectrophotometer (Jasco V-530). To predict their structural conformation and functional group, the extracted pigments (1 mg/ml of pigment dissolved in methanol) were analyzed in the range of 4000 cm-1 to 400 cm-1 by FTIR spectroscopy (Horiba FT720). The samples were mixed homogenously with dried crystals of KBr to make pellets and immediately used for the FTIR analysis to avoid any water absorption.
Estimation of polyphenols in pigments by Folin-Denis method. The polyphenol estimation of the respective pigments was performed in a 96-well plate by the Folin-Denis method [17]. All four pigments (1000 μg) were dissolved in 1 ml of 5% methanol for this assay. A standard curve of tannic acid (20−100 μg/ml) was plotted, and the reaction set up contained- 100 μl pigment + 50 μl Folin-Denis reagent + 50 μl saturated Na2CO3. The absorbance was taken at 760 nm (BioTek Instruments Inc.) and the concentration of polyphenols present in the pigment was calculated from the standard graph and was represented in μg tannic acid equivalent (TAE).
Evaluation of the antioxidant potential. The antioxidant potential of the pigments was determined using FRAP, ABTS, and DPPH assays.
FRAP assay. FRAP was evaluated using the method described before [28]. The reaction set up contained- 180 μl FRAP reagent + 18 μl D/W + 6 μl pigments. 250 μg/ml, 500 μg/ml, and 1000 μg/ml of the pigments (dissolved in 5% methanol) were used for this assay and ascorbic acid (200 μg/ml) was used as a positive control. FeSO4·7H2O (100−1000 μmoles/l) was used to prepare the standard curve and the readings were taken at 595 nm (BioTek Instruments Inc.). The equation of the standard graph was used to determine the FRAP activity and it was represented as μmoles Fe2+ equivalent.
ABTS assay. The potential of the pigments to neutralize ABTS+ radicals was evaluated by ABTS assay [29]. 250 μg/ml, 500 μg/ml, and 1000 μg/ml of the pigments (dissolved in 5% methanol) were used for this assay. Ascorbic acid (200 μg/ml) was used as a positive control for this assay. 50 μl of pigment was added to 150 μl of ABTS solution and kept for 15 minutes in dark. Then the absorbance was taken at 734 nm (BioTek Instruments Inc.). The following formula was used to determine the percent antioxidant activity:
DPPH assay. The free radical scavenging ability of the pigment extracts was measured by DPPH assay [29]. For the assay, DPPH (0.1 mM in methanol) was used as the stock reagent. 250 μg/ml, 500 μg/ml, and 1000 μg/ml of the pigments dissolved in 5% methanol were used for this assay. 50 μl of pigment was added to 150 μl of DPPH solution and kept for 30 min in dark at room temperature. The readings were then taken at 517 nm (BioTek Instruments Inc., USA). The antioxidant activity was calculated as follows-
Ultraviolet protection assay with cling film. The ultraviolet protective ability of the pigments was evaluated by using the method described previously [26]. Initially, 500 μl of UV susceptible
Evaluation of Sun Protection Factor (SPF). The SPF of the pigments was determined using the Mansur equation [30]. The absorption spectrum between 290−320 nm, at 5 nm interval was taken and methanol was used as blank. The SPF factor for each pigment was calculated as follows:
EE × I values are constants [30]. CF is correction factor (=10), I is the solar intensity spectrum, Abs is the absorbance of the sunscreen product, and EE is the erythemal effect spectrum.
Statistical analysis. The statistical analysis was performed with Microsoft Excel and SigmaStat3.5 software. Experimental data is depicted as mean ± standard deviation (SD). One-way analysis of variance (ANOVA) followed by a post hoc test (Student-Newman-Keuls) was applied to the ‘UV protective assay’ and ‘UV exposure optimization data’. The differences were deemed significant when
Many bacterial colonies were obtained on the agar plate after isolation from different samples. The plates were exposed to UV light for 30 s and incubated overnight. Only four colonies showed intense pigmentation after UV exposure. They were named - Milky yellow, Pink, Golden yellow, and Yellow according to their color (Figs. 1A−D). UV-C exposure can lead to a stress response for bacteria which can cause cell death and mutation depending on the exposure time. Some bacteria have been shown to increase pigment production after UV exposure too [31]. Therefore, the UV exposure time for the cultures was determined, to get intense pigmentation without causing any potential detrimental effect on the cell number. It was observed that
The colony characteristics and Gram’s nature of the isolates are depicted in Table 1. After 16S rDNA sequencing, the phylogenetic tree was constructed and the strains were identified to be
Table 1 . Colony characteristics of the isolates.
Name of the Organisms | Gram’s nature | Morpho-logy | Color | Opacity | Consistency | Elevation | Border | Size |
---|---|---|---|---|---|---|---|---|
- | Short rods | Yellow | Translucent | Butyrous | Flat | Irregular | 2 mm | |
- | Coccobacilli | Golden yellow | Translucent | Butyrous | Flat | Irregular | 2 mm | |
+ | Cocci in diploid and cluster | Milky yellow | Opaque | Mucoid | Slightly raised | Irregular | 3 mm | |
+ | Cocci in cluster | Pink | Opaque | Mucoid | Slightly raised | Irregular | 2 mm |
To obtain the pigments in high concentration, certain growth parameters of the bacterial cultures such as the temperature of incubation, UV exposure, salt concentration, and pH of the medium were optimized [31]. Yellow pigment producer showed higher growth when incubated at room temperature, whereas, for Golden yellow, Milky yellow, and Pink, the optimum temperature for growth was 37℃. It was observed that all the cultures showed higher growth between pH 7 and pH 8, indicating that neutral or slightly alkaline pH was the optimum pH for the growth of these organisms, but Pink pigment-producing bacteria had shown growth between pH 3 to pH 9 in considerably higher rate. It was observed that all the cultures showed higher growth between pH 7 and pH 8, indicating that neutral or slightly alkaline pH was the optimum pH for the growth of these organisms, but pink pigment-producing bacteria had shown growth between pH 3 to pH 9 in considerably higher rate (Fig. 1E). After pH and temperature, the salt concentration was optimized for the isolates. All the organisms were able to survive in a wide range of salt concentrations and could tolerate up to 5% NaCl in the medium. The result also confirmed that
The pigments were isolated by solvent extraction which is a crude method of isolation. Therefore, the components of the extracted pigments were determined using TLC and HPLC. For TLC, only one spot was obtained for Golden yellow, yellow, milky yellow and pink pigment samples after exposure to iodine vapor and their obtained Rf values were 0.79, 0.51, 0.75, and 0.622, respectively (Fig. S2). This indicated that the pigments contain a single constituent and are pure. Our HPLC data also supported this fact. All four pigments showed retention time (Rt) in the range of 3.3−3.5 min respectively, in the HPLC analysis. This analysis ascertains a satisfactory level of pigment purity through the solvent extraction method. The gradient mode and mobile phase (H2O: Methanol: Formic acid) were found to be the most appropriate for the separation of pigment extracts. Due to the moderate hydrophilicity of both the carotenoid and flexirubin pigments, they elute early with the solvent phase of intermediate polarity (Fig. 3).
Characterization of the pigments was done using FTIR and UV-visible spectroscopy. Through UV-vis spectroscopy (Fig. 4), it was observed that pink pigment isolated from
FTIR of all four pigments was carried out to understand their chemical characteristic (Fig. 5). FTIR results for the pink pigment showed the C-O stretching frequency at 1649 cm-1 which represents the carboxyl group, indicating the presence of chelating groups or ester group or long-chained aliphatic group. The broad hump at 3788 cm-1 represented the presence of the -OH/ NH functional group. Milky yellow pigment showed a similar spectrum, only with the reduced intensity at 1075 cm-1 peak, which may be due to the smaller contribution of the aliphatic chain. The broad hump was also shifted to 3509−3336 cm-1 which is mostly for -OH linkage and small water adsorption. These peaks indicated that milky yellow and pink possibly have the carotenoid structure [35]. Golden yellow showed a strong peak at 1634 cm-1 which represents the aliphatic carbonyl group, most probably in amide linkage or ester linkage with a long aliphatic chain. The peak at 1412 cm-1 also represented the C-H stretching frequency of -CH3 situated in the fatty acid/long-chain group which confirms the ester formation. The asymmetric C-H stretching frequency at 1075 cm-1 was also elevated from the aliphatic hydrocarbon chain. Therefore, the golden yellow pigment from
Natural pigments are known to contain polyphenols and studies prove that these polyphenols contribute to antioxidant activity [36]. Therefore, in this study, the total amount of polyphenols present in the pigments was determined by the Folin-Denis assay. Pink showed the highest amount of polyphenol content (263 μg TAE), followed by Yellow (217 μg TAE), Golden yellow (101 μg TAE), and Milky yellow which had the least polyphenol content (71 μg TAE) (Fig. 6A). Since all the pigments were found to contain a high amount of polyphenol, this result indicated that these pigments could be potent antioxidants.
One single assay is usually not reliable enough to conclusively determine the antioxidant potential of the compounds [37]. Therefore, we have determined the antioxidant potential through three different assays. The reducing power of the compounds was evaluated using the FRAP assay, which in turn indicates its antioxidant potential [38]. Studies indicate that not all antioxidant compounds react at the same rate with FRAP and its sensitivity depends upon the type and amount of polyphenols present [39]. Pink showed the highest ferric reducing ability, followed by Golden yellow, Milky yellow, and Yellow (Fig. 6B).
The free radical scavenging potential of any antioxidant compound is evaluated using DPPH and ABTS assays. Antioxidants donate hydrogen to free radicals and thus scavenge them [29]. Studies have reported that higher molecular weight phenolics react more readily with ABTS+, whereas, the steric accessibility of DPPH allows small compounds to react rapidly with it [38, 39]. It was observed that Yellow showed the highest ABTS scavenging ability (92 ± 0.75%), followed by Golden yellow (76 ± 6%), Milky yellow (75 ± 4%), and Pink (61 ± 3%) (Fig. 6C). The positive control, ascorbic acid (200 μg/ ml) showed 72 ± 3% free radical scavenging activity in this assay. The results of DPPH assay indicated that Milky yellow had the highest (29.6 ± 0.32%) antioxidant activity, followed by Yellow, Pink, and Golden yellow (Fig. 6D). The ascorbic acid also showed 87 ± 4% of free radical scavenging activity in this assay. It was also observed that the DPPH and ABTS scavenging efficacy of the pigments increased with the increasing concentration.
These pigments showed absorbance in the UV range, its UV-protective property was tested against UV susceptible
In the present study, we have investigated the antioxidant potential of bacterial pigments. For that purpose, four pigments were extracted from bacteria such as
The authors would like to thank Dr. Ankan Dutta Chowdhury, Sizouka University for his help in FTIR analysis. The authors also express their sincere gratitude to the Department of Microbiology, St. Xavier’s College (Autonomous), Mumbai and Radiation Medicine Centre, BARC, Mumbai for providing laboratory facilities, and their valuable expertise for this work.
The authors have no financial conflicts of interest to declare.
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