Microbial Biotechnology | Protein Structure, Function, and Engineering
Microbiol. Biotechnol. Lett. 2023; 51(4): 333-352
https://doi.org/10.48022/mbl.2309.09009
Shreya Pandya1 and Akshaya Gupte2*
1Department of Microbiology, Natubhai V. Patel College of Pure and Applied Sciences, Vallabh Vidyanagar-388 120, Gujarat, India
2P. G. Department of Biosciences, Sardar Patel University, Satellite Campus, Bakrol, Anand-388315, Gujarat, India
Correspondence to :
Akshaya Gupte, akshaya_gupte@hotmail.com
Transaminase represents the most important biocatalysts used for the synthesis of chiral amines due to their stereoselectivity. They allow asymmetric synthesis with high yields and enantioselectivity from their corresponding ketones. Due to their environmentally friendly access for the preparation of chiral amines, they have attracted growing attention in recent times. Thus, the production of chiral compounds by transaminase catalysed reactions is considered as an important application in synthetic organic chemistry. Therefore, transaminase is considered to be an important enzyme in the pharmaceutical and chemical industries. ω-Transaminase holds great potential because of its wide substrate specificity thus making it a suitable enzyme to be used at an industrial scale. This review highlights the reaction mechanism, classification, substrate specificity, and biochemical properties. The review also showcases the application of ω-transaminase in organic chemistry with a focus on the production of active pharmaceutical ingredients (APIs).
Keywords: ω-Transaminases, chiral amines, biocatalyst, active pharmaceutical ingredients
Transamination using enzymes has gained significant interest in recent years as an efficacious method for the synthesis of chiral amines. Chiral amines are indispensable and prevalent as a key building block in agrochemicals, fine chemicals, and active pharmaceutical ingredients. Therefore, they have attracted particular attention from synthetic chemists. In this context, there is increasing interest in reactions, including ω-transaminases, which have been identified as a greener and more sustainable method for the production of chiral amines. Various enzymes, including hydrolases, transferases, and oxidoreductases, have been used for the making of chiral amines. One such enzyme is a PLP (Pyridoxal 5-Phosphate)-dependent transaminases, that catalyze the asymmetric amination of a ketone to a corresponding amine. High enantioselectivity is exhibited by this biocatalyst and has a broad substrate tolerance. Therefore, it is widely accepted for the production of optically pure amines.
Transaminase (Tams) was discovered by Needham [1] and Braunstein and Kreitzman [2]. They are ubiquitous and are known to be present in bacteria, fungi, plants, and even in humans, where they have a wide range of clinical implications [3]. They are located in the cytosol and mitochondria and thus play a vital role in the integration of many metabolic processes. They are used to synthesize chiral amines on a commercial scale. They have also been employed in the pharmaceutical, flavor and fragrance, chemical, food, and cosmetics industries [4]. The general mechanism is shown in Fig. 1 which means that the enzyme transfers the amino group from the amino donor and converts it into its corresponding keto acid and the amino acceptor, by accepting the amino group, will convert it into the corresponding amino acid/amine. More than 50% of the drugs on the market are chiral compounds. APIs are used to prepare medicines that have a backbone made of chiral amines and are used to treat several diseases like obesity, cancer, tuberculosis, diabetes, etc. The most popular example is the formation of Sitagliptin an antidiabetic drug produced by asymmetric synthesis, using transaminase with a purity of 99.95%.
Biocatalytic processes have been developed using transaminases, which are environmentally benign alternatives to chemo-catalytic methods because they can operate under gentle conditions thus averting the need for flammable metal-organic reagents. These biotransformation reactions allow the formation of several intermediates which are precursors to many pharmaceutically crucial drugs and are also sometimes used as chiral resolving auxiliaries. Biotransformation reactions catalyzed by transaminase confers high stability, high turnover rate, stringent enantioselectivity, and no requirement of external cofactor regeneration and thus becoming an enzyme of interest in both research and pharma industry. This review will focus on the approaches used for classification, applications, engineering, and the novel approaches used in Tam discovery. Highlighting the changing trends during the last two decades. Furthermore, this will also address and explore the benefits and drawbacks of Tam discovery and their applications in industrial biocatalysis.
To understand the transamination reaction by transaminase, a detailed knowledge of the active site is necessary. Several ω-transaminases have been isolated from different sources of microbial origin. However, the substrate specificity shown was found to be similar. An active site model of omega transaminase from
Transaminases stick to a prototypical bi-reactant mechanism called a ping-pong bi-bi or double displacement reaction mechanism where the enzyme will first bind to the substrate and has to release the corresponding product before binding to the second substrate (Fig. 2). The transaminase reaction is divided into two steps: (1) Oxidative deamination and (2) Reductive amination. Transaminase is an apoenzyme as it requires the attachment of PLP to become a holoenzyme. The PLP cofactor first binds to the lysine residue in the active center of the enzyme, forming a Schiff's base, an internal aldimine.
In the first step- the ε-amino group of the lysine residue is replaced by the amino donor which acts as a substrate. It is a transaldimination reaction that leads to the formation of an external aldimine [11]. The pyridoxal ring acts as an electron sink and allows the conversion of external aldimine to ketamine with a quinoid intermediate via a 1, 3-prototropic shift. Meanwhile, the hydrolysis of ketamine will occur which ultimately leads to the release of keto-product as well as pyridoxamine-5’-phosphate (PMP), a deciding intermediate. In the second step- the reaction only carries forward with the formation of PMP, which is an amino donor in the second half, and the ketones and aldehydes will be the amino acceptors. The amino donor E-PMP (Enzyme-PMP complex) transfers the amino group to the acceptors ultimately leading to the release of corresponding amino acids and also the regeneration of E-PLP (Enzyme-PLP complex) for the next run of reaction.
Transaminase enzymes are categorized under various criteria. Based on the position of the transferred amino group, transaminases have been broadly grouped into α-Tams and ω-Tams [12]. α-Transaminase acts only on the α-amino groups and allows only the formation of α-amino acids for which the presence of a carboxyl group in the α-position is required. On the other hand, ω-Tams transfers amino groups from a donor to an acceptor. Here, the amino group transferred will be from a non-α position amino acid or an amino compound with no carboxylic group which leads to the formation of chiral amine and a ketone co-product. Their ability to accept different ketones and aldehydes for the biotransformation reaction makes them a dominant player in the field of biocatalysis [13].
Transaminase can also be classified based on its fold types. The first report of the classification of PLPdependent enzymes was reported by Grishin
One more criterion, based on which transaminase enzymes can be classified, is “Chirality”. Many enzymes can distinguish between two optical isomers of a particular substrate and transaminase is one of them. The two isomers are just chemical species that are non-superimposable. They can be designated as (
Based on sequence and structure similarity, transaminase can also be categorized into six classes. Class I and II including L-aspartate transaminase and L-alanine transaminase, class III ω-transaminases, class IV Damino acid transaminases and branched-chain transaminases (BCAT), class V are L-serine transaminase, and class VI includes sugar transaminase as described in Table 1 [16, 17].
Table 1 . Classification of various transaminases.
Transaminase class | Enzymes names | E.C. No |
---|---|---|
Class I+II | Aspartate transaminase | 2.6.1.1 |
Alanine transaminase | 2.6.1.2 | |
Aromatic transaminase | 2.6.1.57 | |
Tyrosine transaminase | 2.6.1.5 | |
Histidine-phosphate transaminase | 2.6.1.9 | |
Phenylalanine transaminase | 2.6.1.58 | |
Class III | Acetyl ornitihine transaminase | 2.6.1.11 |
Ornithine transaminase | 2.6.1.13 | |
omega-amino acid transaminase | 2.6.1.18 | |
beta-aminocarboxylic acid transaminase | - | |
Gamma aminobutyrate transaminase | 2.6.1.19 | |
Diaminopelargonate transaminase | - | |
Class IV | D-Alanine transaminase | 2.6.1.21 |
Branched-chain transaminase | 2.6.1.42 | |
Class V | Serine transaminase | 2.6.1.51 |
Phosphoserine transaminase | 2.6.1.33 | |
Class VI | TDP-4-amino-4,6-dideoxy-D-glucose transaminase | 2.6.1.33 |
L-glutamine:2-deoxy-scyllo-inosose transaminase | 2.6.1.100 | |
TDP-3-keto-6-D-hexose transaminase | 2.6.1.89 |
Transaminases are a very good option for the production of optically active chiral amines. They have wide applications and are also used at the industrial level for the production of many crucial drugs. In the case of transaminases, the two major problems faced by the enzyme are the unfavorable equilibrium constant and substrate/product inhibition [18]. Other problems include its poor thermostability and low solubility for different substrates. One of the approaches to shifting the equilibrium constant in the forward direction is to use the amine donors in large amounts, which will lead the reaction further in the direction of the amine product. Isopropyl amine was used as an amine donor in the presence of ATA 113 TAM to convert the 4-acetylbutarate to 6-methyl-2-piperidone [19].
Removal of the co-product is another way of shifting equilibrium. This strategy can be applied through different techniques like working under reduced pressure, i.e, evaporation of co-product and chemical transformation or degradation with the help of additional enzymes (cascade reactions/coupling reactions). The properties of the product amine and other components of the reaction mixture will decide which strategy is best. The other problem is substrate/product inhibition. Initially, the problem was solved by simply increasing the substrate concentration and by the removal of the product. The problem of product inhibition can be resolved with an approach to protein engineering. It can be done in two ways (1) rational design and (2) directed evolution. These two methods can be used in the redesigning of substrate specificity of transaminase. Another problem with transaminases is the solubility of the substrate. Other than aqueous media, organic solvents are also used in the reaction medium. They have certain advantages such as they can decrease the problem of substrate/ product inhibition to a certain level and also resolve the problem of substrate solubility and mass transfer at low boiling points as solvents are easy to evaporate. The presence of the organic solvents does not only lower the enzyme stability but also interferes with the downstream processing. Another problem with transaminase is the substrate specificity of the enzyme, which also favors the equilibrium of the reaction. As the equilibrium constant changes with different substrates, therefore, choosing the right amino donor and acceptor becomes very important and thus can provide the necessary conditions for the asymmetric synthesis of chiral amines.
The specialty of any biocatalyst, especially when it synthesizes optically pure amines, depends on its specificity towards a substrate. Transaminase shows a wide range of substrate specificity. Exploration of new biocatalysts will allow us to find such new enzymes that have a good substrate specificity as well as good enantioselectivity, which will ultimately lead to the path of new drug molecule synthesis and would further help in the curing of disease or can be used as an active pharmaceutical intermediate.
Fundamentally, there are two approaches for uncovering novel enzymes with unique properties and wide applications (1) gene mining and (2) protein engineering. Gene mining takes a look at the enzymes present in nature through different techniques. Nevertheless, it is time-consuming. On the other hand, protein engineering is more about tailor-making an enzyme either by improving its functional properties or by trimming the chemical synthesis [20]. With the help of these two strategies, transaminases with different substrate specificity from different bacteria with different methods can be identified.
Nature holds a large database and therefore gene mining of enzymes (transaminases) becomes necessary. These new enzymes may possess characteristics that have never been recognized before. Today, with the use of such advanced technology it has become possible to discover new biocatalysts directly either from experimental assays or by the assumption of the protein structures of its amino acid sequences. There are different strategies of gene mining by which different transaminases have been discovered with different methods.
The transaminases have been exploited mainly by [21]. The culture-based technique helped to uncover various transaminase enzymes. Tam from
Table 2 . Transaminase discovered from cultured microorganisms.
Source organisms | (S)/(R) | Comments | Reference |
---|---|---|---|
Activity-guided approach | |||
(R) | Enrichment media used with 3,4-dimethoxyamphetamine as SNS | 26 | |
(S) | Enrichment media with β-amino-n-butyric acid as SNS | 23 | |
(S) | Enrichment media substituted with β-amino-3-phenylpropionic acid | 24 | |
(S) | Enrichment media used with 1-cyclopropylethylamine as SNS | 25 | |
(S) | Enrichment media with 7-methoxy-2-aminotetraline as SNS | 44 | |
(R) | Enrichment media used with various (R)-amines | 27 | |
(S) | Enrichment media with 1-PEA as SNS | 45 | |
(S) | Enrichment media with 1-PEA as SNS | 28 | |
(R, S) | Enrichment media with α-MBA as SNS | 43 | |
(S) | Enrichment media substituted with β-phenylalanine a | 46 | |
Sequence homology | |||
(S) | Homologous sequence searching with | 29 | |
(S) | Homologous sequence searching with | 47 | |
(S) | Homologous sequence searching with | 30 | |
(S) | Homologous sequence searching with | 48 | |
(S) | Homologous sequence searching with | 6 | |
(S) | Homologous sequence searching with | 50 | |
(S) | Homologous sequence searching with | 51 | |
(S) | Homologous sequence searching with | 51 | |
(S) | - | 53 | |
Thermorudis peleae | (S) | Homologous sequence searching with | 54 |
Key motif-based search | |||
(R) | Fungal source | 32 | |
(R) | Fungal source | 33 | |
(R) | - | 56 | |
(R) | Bacterial source | 55 |
SNS = sole nitrogen source
α-MBA /1-PEA = α-methylbenzylamine/1-phenylethylamine
Homologous sequence searching is another technique used to identify new transaminases. In this method just by searching for the sequences that are homologous to those that have been identified by the enrichment media culture technique. By using the sequence of the already identified organism as a template, we can find the desired information of the functional gene from the different databases. Using the archetypal
Another strategy is using key motif searches. It is a new method to predict the enzyme functions on the basis of key motifs present in the sequences [31]. The method was very effective and helped to identify 17(R)-selective ω-Tam. This is of significance for the prediction of function rather than identifying sequence similarity. Based on this strategy, many R-selective Tam have been identified in databases. The discovery of R-selective transaminases from fungi, including
Metagenomic mining is a new approach that allows the direct isolation of DNA from the environment (e-DNA) and also nullifies the necessity of culturing the organisms at the same time [36]. This metagenomic mining is further bifurcated into two channels (1) sequence-driven metagenomics and (2) functional metagenomics.
Sequence-driven metagenomics. The focus of this approach is the sequence analysis of DNA which was extracted directly from the environment and aims to sequence a particular gene of interest. The sequence analysis involves steps like assembly, binning, gene prediction, and annotations of newly discovered sequences. To get the new sequence, the approach also needs reference sequence information [37]. This approach is very helpful in investigating extreme environments (hot springs metagenome, hypersaline) to identify novel transaminases. Cloning and over-expression of 11 putative tams were obtained from the metagenome of the oral cavities of humans [38]. Transaminases have also been isolated from extreme environments through sequencedriven metagenomics, especially from the hot springs of Iceland and Italy [39]. A sequence-driven approach was used for the successful retrieval of Tams from a domestic drain metagenome [40]. They were able to clone and express successfully 29 sequences in
Functional metagenomics. This technique is used rarely but plays an important role. It involves e-DNA isolation which will be cloned and expressed into vectors. DNA is cut into pieces of the desired size and cloned into a suitable expression vector. Vectors transform the host, which is generally
Table 3 . Transaminase discovered using metagenomics approaches.
Enzymes | (S)/(R) | Comments | References |
---|---|---|---|
Sequence-driven approach | |||
pQR1108-pQR1118 | (S) | Metagenome derived from oral cavities of humans | 38 |
KMG-TAm4 | (S) | Metagenome derived from Triassic period salt mine | 53 |
pQR2188-pQR2191 | (S) | Metagenome derived from DNA isolated from domestic drain | 40 |
AT-872, AT-4421 and AT-1132 | (R) | Metagenome derived from Curonian Lagoon | 58 |
Functional metagenomics | |||
pRT15-TA | (S) | Fosmid library generated for screening. Sequence 15% shorter than Vf-Tam and Cv-Tam | 42 |
TR1 to TR10 | (S) | Fosmid library Metagenomic derived from 28 geographical distinct environemnt including, chronically polluted marine sediment samples, an acidic beach pool and the genome of Pseudomonas oleovorans | 57 |
In recent years numerous studies involving the protein modification, and engineering of Tams have increased. To make the enzyme more efficient, protein engineering is done to design an advanced enzyme that is better than its wild part. Tailor-made biocatalysts are needed to achieve high activity and stability under nonideal conditions such as pH, temperature, and solvent. Based on the available information about the proteins, there are two options: one is rational design and the other is directed evolution. The knowledge of the protein structure is essential for the rational design to identify which is the most suitable amino acid to be substituted in order to achieve a specific goal (enantio-selectivity, thermal stability, substrate spectrum, tolerance to organic solvents).
Directed evolution describes the process of evolving enzymes in the laboratory by the in vitro imitation of Darwinian evolution. In 2018, Frances Arnold received the Nobel Prize in Chemistry for pioneering the field of directed evolution, highlighting the importance of this methodology for the adaption of proteins and biocatalysts to benefit humankind. Directed evolution involves random mutagenesis and rational design concerned more with sequences and structural analysis [59].
Random mutagenesis. Directed evolution is directly concerned with random mutagenesis. Random mutagenesis is the technique that allows us to speed up this naturally occurring phenomenon of advancing the gene ability through some physical or chemical agents [60]. Here, the gene is selected and its ability is improved through mutagenesis followed by library preparation of the mutants which is further selected or screened (Fig. 5). For example, to improve the substrate specificity of aspartate aminotransferase, some modifications have been done by directed evolution using DNA shuffling and selection in the auxotrophic
Rational design. Rational design is a top-down approach that involves more computer modeling and techniques, such as site-directed mutagenesis. In this approach, prominence is given to the mastery of protein structure and amino acid interactions from the start. Site-directed mutagenesis has appeared to be valuable in studies, which led to the confirmation of structural and mechanical aspects of many enzymes. Protein engineering by rational design can be used to improve properties of enzymes like enantioselectivity, specificity towards the bulky substrate, and substrate promiscuity. It was reported that the active site of
With the use of enrichment culture techniques and protein engineering, several transaminases have been found in recent years. Transaminases, particularly ω-transaminases, have a broad substrate specificity that includes both amino donors and acceptors. This wide range of substrate specificity highlights the enzymés versatility and functionality, making it necessary to determine the enzymés specificity and enantioselectivity before being used commercially. As a result, many high-throughput screening methods have been developed to aid in the selection of an ideal enzyme for a given application at both the industrial and research level.
Screening procedures should meet the following criteria: low cost, efficiency, speed, sensitivity, and applicability. The old traditional procedures rely on HPLC for detection, whereas GC and MS are substantially more timeconsuming. Enrichment cultivation is an effective method to discover transaminases and transaminase mutants since it provides information on specificity, product inhibition, and enantioselectivity [71]. However, the knowledge regarding the enzyme activity and biomass cannot be proportional directly to this method, which shows its limitations [72]. Therefore, various methods have been developed that speed up the identification of enzymes, such as screening of transaminase by the use of α-MBA as an amine donor and acetophenone detection by HPLC or spectrophotometrically (Table 4). The high throughput screening methodology for transaminase using phenol red as a pH indicator with LDH/ GDH (Lactate dehydrogenase/Glucose dehydrogenase) was used for the screening of the ω-Tams enzyme. Here L-alanine was used as an amino donor and LDH removed the pyruvate which was generated and GDH helped in the regeneration of the NADH cofactor [29, 73, 74]. The other two approach involves the use of isopropylamine as an amino donor instead of L-alanine and the use of amino acid dehydrogenase which converts pyruvate back to alanine. One of the most widely used methods is the O-XDA assay [75]. O-XDA undergoes polymerization during the reaction and forms black precipitates.
Table 4 . High-throughput screening assays for transaminase.
Sr. No. | Substrate | Additional Reagent | Method of Detection | Evaluation Type* | Liquid or Solid | References |
---|---|---|---|---|---|---|
1 | Alanine | Oxidase, pH indicator | Colour change | C | L | 74 |
2 | α-amino acid | CuSO4/MeOH | Blue colour | E | L | 82 |
3 | Alanine and glutamate | Oxidase, tetrazolium | Colour change | C | L | 83 |
4 | Alanine and glycine | Oxidase, HRP, colour indicators | Colour change | C | Both | 81 |
5 | Phenylethylamine (1-PEA) | - | Absorption at 245 nm with a UV Spectrometer | C | L | 84 |
6 | ortho-Xylylenediamine | - | Dark colour | C | Both | 85 |
7 | Complex of Cu (II)-Ala instead of alanine | Cu (II) and BSA | Fluorescence quenching with a fluorescence spectrometer | C | L | 77 |
8 | EWG-substituted aromatic amines | - | Colored product | C | Both | 75 |
9 | 2-Hydroxy ketone | Tetrazolium | Colour change | E | L | 86 |
10 | 1-(6-Methoxynaphth-2yl) alkylamines | - | Fluorescence at 450 nm with a fluorescence spectrometer | C | L | 87 |
11 | Substituted aminotetraline | - | Colored product exposed to air | C | L | 62 |
12 | 2-(4-nitrophenyl) ethan-1-amine | - | Red colour | C | Both | 88 |
C : continuous
E : end point
L : liquid
A colorimetric method using CuSO4/MeOH solution was developed which gives a blue color with an amino acid that can be detected at 595 nm [76]. A similar assay for the conversion of alanine to pyruvate was applied to characterize glutamic-pyruvic transaminase. In the assay dissociation of the Cu(II)-L-alanine complex is observed which results in free Cu(II) ions thereby combining with BSA, leading to a fluorescence quench which is monitored at 340 nm [77]. Another colorimetric detection is carried out using amino acid oxidases (AAO) and horseradish peroxidase (HRP) where an alanine is deaminated by AAO to produce hydrogen peroxide (H2O2), which can be further detected using HRP [78-80]. Tetrazolium salts are also considered one of the efficient reagents which assist in detecting 2-hydroxyl ketone. In the presence of 2-hydroxyl ketone, 2, 3, 5-triphenyl tetrazolium chloride (TTC) changes its color from colorless to red and forms a formazan precipitate. Using this assay, the polyamines, a novel class of bifunctional mono- and diamine transaminases were characterized. Another interesting method of detection is based on pH change. Here the pyruvate is reduced by LDH and oxidation of glucose to gluconic acid by GDH, which leads to the change in color of the pH indicator. Glyoxylate is used as an amine acceptor in glycine oxidase-based assay. It is based on a similar principle of transaminase/ amino acid oxidase. The technique has been successfully used for the profiling of the substrate of (R)- and (S)- transaminases [81]. A kinetic assay was developed that measures acetophenone at 300 nm and allows both qualitative and quantitative screening of transaminases [73]. A spectrophotometric method was developed where 2-(4-nitrophenyl) ethan-1-amine was used as a donor reacting with pyruvate as an acceptor and PLP as a co-factor in the presence of Tam enzyme which led to the formation of red precipitates. The reaction was stopped using DMSO as the red precipitates are more soluble in that and retain their red color for a long time. The absorbance measured was at 465 nm [88].
The kinetic resolution, Asymmetric synthesis, and Deracemization are the approaches used for the synthesis of enantiopure amines using ω-transaminase.
Kinetic resolution is one of the straightforward synthesis strategies for the production of chiral compounds and divides the two enantiomers into a racemic mixture (Fig. 7). In this approach, an enantioselective transaminase is used which converts the undesired amine into its corresponding keto product while the slow-reacting desired amine will remain in the reaction unconverted which can then be easily separated [89]. Kinetic resolution faces many drawbacks, such as a maximum theoretical yield of 50% is possible only, low atom efficiency of reactions, more amount of amine acceptors is required, and the ketone products may have an inhibitory effect on the enzyme. To cope with such problems, a kinetic resolution is used in association with deracemization and asymmetric synthesis. To make it more efficient, the transaminase enzyme is coupled with other enzymes.
However, the method of kinetic resolution has been upgraded to increase the yields. A step of racemization is included in it which will take back the undesired product to its starting racemic mixture. This method is now called dynamic kinetic resolution. Four new ω-TAs from
Another stumbling block of kinetic resolution is product inhibition due to ketone-product formation, which can be overcome by shifting the reaction equilibrium towards the product formation by physical extraction/vaporization.
In 2007, asymmetric synthesis was considered one of the most desirable reactions by five of the largest pharmaceutical manufacturers worldwide [91]. Asymmetric synthesis and deracemization can generate 100% theoretical yield and thus both methods are preferred at the industrial level [92]. Asymmetric synthesis involves the prochiral molecules as substrate which can be converted into two enantiomers formed in an unequal amount. The product that is formed is generally a racemic mixture but if the reaction is carried out using a particular stereoselective enzyme then only one isomer will form in, more amount over another (Fig. 8). Asymmetric synthesis of alpha methylbenzylamine produced from acetophenone and alanine using crude extract and whole cells enzymes. Here, the ω-Tams and ALS (acetolactate synthase) were co-expressed in recombinant
Deracimization is a process that employs two stereocomplementary ω-Tam. The formation of ≤50% enantiopure amine is done in the primary step of the deracemization process and a ketone co-product is formed by the amination of amine (Fig. 9). Then the asymmetric amination of the ketone is carried out by an enantiocomplementary ω-TA, which leads to the formation of the pure amine with up to 100% yield. Mexiletine is a pharmaceutically important drug that is synthesized through deracemization. It is an orally effective antiarrhythmic drug [103, 104]. Deracemization of amines such as 4-phenylbutan-2-amine, a precursor for the antihypertensive dilevalol; sec-butylamine, 1-methoxy-2-propanamine and 1-cyclohexyl ethylamine, precursors of inhibitors of tumor necrosis factor-α (TNF-α); and 1-phenyl-1-propylamine, which is a precursor of antidepressant agent corticotropin-releasing factor type-1 receptor was also reported [103, 105].
Enzymatic cascades are way more advanced as compared to other strategies. They require more than one enzyme for the synthesis of the target compound. ω-transaminase is used in the cascades along with the other enzymes to synthesize the crucial compounds in minimal steps and in less time with high purity and enantioselectivity. The additional benefits these cascades provide are the removal of toxic intermediates and the removal of wastes, minimum use of organic solvents, and thus increased atom efficiency [78, 89]. There are four main types of Cascade reactions: (1) Linear cascades represent consecutive transformations in one pot. The good part of the linear cascade is that we can avoid intermediates which are toxic and unstable and may be explosive. (2) Parallel cascades, are generally used in redox biocatalysis where the second reaction is going simultaneously, coupled with the product formation of the previous reactions. (3) The third type, orthogonal cascades, are almost similar to parallel cascades, often used in shifting the reaction equilibrium towards product formation. (4) The fourth type, is cyclic cascades, which are mostly used for the stereo-inversion processes.
Many such cascades are reported using ω-transaminase. Fuchs reported the synthesis of naftifine, which is an antifungal reagent. Naftifine was synthesized from cinnamic alcohol with an overall yield of 51%. The synthesis was done through a cascade route that employed two enzymes, i.e. galactose oxidase from
Substrate specificity of transaminase is one of the major aspects. The substrate specificity of the enzyme will let us know which type of compound or product will form and in what percent yield. If we consider α-Tams, then they only react with α-amino acids and α-keto acids, whereas ω-Tams are much more versatile in this aspect. They can easily accept amino acids, amines, ketones, and aldehydes also. They have a broad substrate spectrum and are therefore more useful at the industrial level. Shin characterized the transaminase from
Transaminase has evolved as an interesting enzyme. The enzymes discovered so far have the potential to synthesize different chiral compounds. The enzyme is a good alternative to conventional methods which are long and require both time and money. The transaminases synthesize various pharmaceutically important drugs or their intermediates in a single step. The different methods of discovering the enzyme have now made it easy to explore various transaminase enzymes. The metagenomic methods are very advanced and managed to discover some (R)-transaminases as well as some extremophiles. Along with this, protein engineering has also helped to increase the ability of the enzyme to accept a wide range of substrates so that the production of different amines can be possible. It has developed various new enzymes to study and also improved the enzymatic properties of already existing enzymes.
Rational design and directed evolution also aid in the potential of transaminase to catalyze the reaction which is desirable for pharmaceuticals. The enzyme also doesn’t require a stringent condition and the cofactor of the reaction generates itself, which is a plus point.
Despite all these advantages of transaminase, it has faced some challenges during the synthesis reaction. Poor stability of the product, a narrow range of substrates, and unfavorable equilibrium during the reaction are major challenges for the enzyme. Despite the shortcomings faced by transaminases, the applications are much more and quite interesting, which has brought the attention of the pharma world towards them. The most historic application of transaminase was the development of the anti-diabetic drug sitagliptin through protein engineering. Synthesis of such drugs at the industrial level helped society, the environment, and industries in an excellent way.
Nevertheless, ω-transaminase puts forward several opportunities in the future for the development of any process. Transaminases, especially ω-transaminase because of their wide range of substrate specificity, are most useful in the biotransformation reactions for the synthesis of drug molecules and thus they have been exploited extensively in recent years. However, for the isolation of (R)-Tams and the related biotransformation reaction, there is a need for new and advanced techniques and screening methods. Advanced screening methods are required for easy detection of amines and ketones. Plate assays are not much regarding transaminase enzyme, so that can also be developed. Some focus should also be given to thermophiles and their discovery, which may open the doors of unexpected opportunities for the future. Currently, the focus in the field of chiral amine is to isolate the enzyme with much advanced features that include enantio-selectivity, region-selectivity, and chemo-selectivity, and to accomplish this more importance should be given to protein engineering with site-directed mutagenesis (rational design and directed evolution). The enzyme has potential not only in the production of drug molecules but is also environmentally friendly and a good alternative for organic chemistry.
All authors contributed to the review conception and design. Literature review, data collection, and analysis were performed by Shreya Pandya and, Akshaya Gupte. The first draft of the manuscript was written by Shreya Pandya and, Akshaya Gupte and all authors commented on previous versions of the manuscript. All authors read and approved the final manuscript.
The authors have no financial conflicts of interest to declare.