Environmental Microbiology (EM) | Microbial Ecology and Diversity
Microbiol. Biotechnol. Lett. 2024; 52(3): 221-232
https://doi.org/10.48022/mbl.2404.04012
Jaiganeshan Muttiah Velmurugan and Lakshmi Krishnasamy*
Department of Microbiology, Sree Balaji Medical College & Hospital, Bharath Institute of Higher Education and Research, Chennai, Tamilnadu 600044, India
Correspondence to :
Lakshmi Krishnasamy, laksh45@gmail.com
Zoonotic diseases are rare but the transmission of disease to humans may cause serious illness. Nipah virus (NiV) is a bat-borne zoonotic pathogen, which can cause severe encephalitis and respiratory distress. The transmission of Nipah virus from bats to humans was first reported in Malaysia in 1998. Different strains of NiV show different epidemiological and clinical features. Few of the strains are highly lethal and can spread to the community resulting in a global threat. However, the availability of effective management or prophylactic measures are only limited. Thus, it is essential to contain such outbreaks by implementing proper infection control and surveillance measures. Many serological and molecular diagnostic techniques have been developed for diagnosis of this infection. This review mainly focuses on the epidemiology, transmission of Nipah virus, pathogenesis and management of NiV infection. The review also throws light on the immune response of NiV in humans and the role of One Health approach in prevention and control of NiV infection.
Keywords: Nipah virus, zoonotic disease, pathogenesis, immune response
Zoonotic diseases, despite being rare, can have devastating effects on humans. In addition to causing serious illness in humans, emerging zoonotic diseases have the potential to disrupt social well-being, entail substantial economic costs, and harbour the potential to evolve into a pandemic as seen in H1N1 influenza, HIV/AIDS pandemic, and the more recent COVID-19 [1]. The Nipah virus (NiV), is a zoonotic disease, endemic in Southeast Asia and the Western Pacific, has been linked to outbreaks of severe encephalitis and respiratory distress [2]. Though the number of NiV infections throughout the various outbreaks remain small, the severity of the disease results in a higher death rate. Bats, particularly the
NiV first appeared in Malaysia in 1998, and the virus was named after Sungai Nipah, a hamlet in the state of Negeri Sembilan in Malaysia, where it was initially identified from a human index patient [6]. The transmission of NiV in different hosts varies geographically, influenced by factors like animal husbandry practices and dietary habits. NiV is most prevalent in areas with a significant population of
NiV epidemiology in Bangladesh was primarily seasonal outbreaks (December to May) occurring in central and north-western Bangladesh, known as the ‘Nipah belt’ [7]. Since 2001, bats have been the primary host, with pigs acting as intermediate hosts for spread of NiV. The most common mode of transmission was through consumption of NiV contaminated raw date palm sap during the harvest season [10]. While pigs exhibit high seroprevalence of NiV, they have not been linked to outbreaks. Person-to-person transmission was a significant mode of transmission in Faridpur, Bangladesh [11].
The two NiV outbreaks in India, recorded in villages of West Bengal (Siliguri in 2001 and Nadia in 2007) [12] occurred due to their close geographical proximity to the ‘Nipah belt’ in Bangladesh and in the state of Kerala in May 2008 [13]. These outbreaks were confirmed to be from bats and amplified by person-to-person transmission. Philippines experience NiV outbreak in 2014, reporting 82% fatality. Those patients had a history of close contact with horses or consumed horsemeat. Person-to-person transmission, especially nosocomial was also identified [14].
Phylogenetic and evolutionary analyses can help understand the epidemiology of NiV, thereby helping in understanding the origins of the virus and in devising preventive measures. Use of these analytical tools unveiled molecular similarity between NiV and Hendravirus (HeV), led to the introduction of a novel genus,
NiV relies on both wild and domesticated animals as source and host for transmission and propagation. NiV spreads to humans through two main routes: via intermediate hosts like pigs and horses, or through food borne transmission, such as date palm sap tainted with fruit bat urine or saliva [21] (Fig. 1). Human outbreaks are often linked to the presence of diverse animal species.
Fruit bats, particularly in the
Pigs act as intermediate or amplifier host for NiV as they consume fruit contaminated by saliva, blood and urine of infected bats [26]. Swine infected with NiV exhibit a pronounced non-productive cough termed as “barking cough” with airway inflammation and encephalitis, commonly referred to as barking pig syndrome [27]. Serological surveys revealed identical gene sequences between viral isolates from pig and humans. In Malaysia and Singapore, NiV infection was most prevalent in pig farmers, with 40% fatality rates was seen in abattoir workers [28, 29]. However, pigs as viral vectors in Bangladesh or India have not yet been demonstrated [30]. The presence of NiV has been documented in sheep and goats, but infection in bovine species, although permissive to NiV, has not yet been reported. While dogs and cats do not seem to be amplifying host of NiV, dogs are susceptible to NiV infection [31]. In the Philippines, NiV infections resulted from slaughtering and consuming horse meat [32]. Very few of the patients were small children, and the majority of the cases included men who worked with pigs [33]. The patients typically reported fever, headaches, and diminished consciousness as symptoms. The number of cases and deaths during the epidemic in Malaysia varied from 238 to 265 depending on the source, indicating a relatively high mortality rate [33].
Food borne transmission of NiV occurs when
Animal to human transmission is most notable where a coexisting ecosystem of bats, pigs, and humans creates an ideal environment for NiV transmission. Domestic and farm animals can contract the virus by consuming palm sap or partially eaten fruit contaminated with NiV containing faeces, urine, or saliva. Handling pigs in slaughterhouses and consuming infected pork meat pose severe risks to humans. During the Malaysian outbreak, the rapid spread of NiV was linked to direct contact with excretions and secretions of sick pigs, including urine, saliva, pharyngeal, and respiratory secretions. Necropsy of pigs revealed severe pulmonary symptoms, supporting the theory of aerosolized NiV transmission from pigs to humans as a significant mechanism. NiV antigen has been found in pig renal tubules, and an outbreak among Singaporean abattoir workers suggested a link between exposure to infected pig urine and NiV transmission [35].
A transmission of NiV between and within humans poses a significant public health concerns. Multiple outbreaks have been linked to human-to-human transmission, particularly in regions (mostly Southeast Asia) where close contact with infected individuals is a social norm. Respiratory secretions, notably saliva, plays a crucial role in person-to-person transmission of NiV [11]. Prolonged exposure to the secretions of infected individuals increases the risk of infection. Studies in Bangladesh and India indicate that caretakers of patients, healthcare professionals (nosocomial), and individuals in close contact with the afflicted contribute significantly to the spread of NiV [36]. More recently sexual transmission of NiV has been documented, with viral RNA detected in semen specimens even after clearance from blood and urine, suggesting a potential immunologically privileged niche in the testis [37].
NiV is a paramyxovirus belonging to the genus
The replication cycle of NiV begins with the fusion of the virus to the host cell membrane. The attachment of the virus G protein is vastly, facilitating pH-independent entry into the host cell. Attachment and binding to the host cell begins when the globular head of the G protein interacts via the two types of receptors, Ephrin (EFN)-B2 or B3 [39]. Ephrins are Class B receptor tyrosine kinases, encoded by EFNB gene and is highly conserved across species [40]. EFNB2/B3 receptors are expressed on surface of endothelial cells of artery (not veins), epithelial cells of upper respiratory tract, alveolar pneumocytes, and in the central nervous system (CNS) [41]. The binding of G protein with the EFNB2 cell receptor induces allosteric changes in the protein, presenting the virus for entry through receptor-mediated mechanisms.
The binding of the G protein to the EFNB2/B3 receptor, activates F protein, which undergoes conformational changes, resulting in the fusion of the viral membrane with the host cell surface. F protein exists as an inactive precursor, F0, on the plasma membrane. The F0 are endocytosed and cleaved by the host cell protease, endosomal cathepsin L, to generate active prefusion proteins, F1 and F2, linked by a disulphide bond forming a heterodimer. After the internalization event, the F1-F2 heterodimers are transported back to the host cell surface, where they are either incorporated into newly budding virions or contribute to the formation of multinucleated syncytia between adjacent infected cells [42]. Upon entering the host cell, NiV genome undergoes transcription, translation, and replication processes. Initially, the viral RNA genome undergoes primary transcription at the 3’ end, utilizing the viral RNA-dependent RNA polymerase to form messenger RNA (mRNA) [43]. The newly synthesized viral mRNA is capped and polyadenylated by the L protein for translation by the host cell machinery. The host cell then initiates viral replication, generating (+) sense antigenomes, which act as templates for the synthesis of (-) sense progeny genomes. Subsequently, viral components assemble on the plasma membrane to form new virions [44].
The clinical signs of NiV in host animals are mostly similar to the clinical presentations of NiV in humans. In
Clinical manifestations of NiV infection in humans typically include fever along with encephalitis and/or respiratory complications [70]. The incubation period spans from 4 days to 2 months, with the majority of individuals (>90%) experiencing symptoms within 2 weeks of NiV exposure. Common signs comprise fever, headache, dizziness, and vomiting, progressing to severe encephalitis [71]. Neurological symptoms involve meningitis, diffuse encephalitis, and focal engagement of the medulla oblongata. A distinctive feature of NiV infection is the occurrence of relapses and delayed onset of encephalitis in survivors, extending months or even years beyond the initial infection [72]. Survivors may face neuropsychiatric sequelae, including depression, personality alterations, attention deficits, and verbal or visual memory deficits [73]. Geographical variations in NiV outbreaks result in significant differences in clinical features, with respiratory symptoms being more pronounced in outbreaks in Bangladesh and India, while Malaysian and Singaporean patients show a lower prevalence of respiratory symptoms [71, 72].
NiV, with its broad species tropism, can infect various cell types. NiV infections encompass diverse tissue and organ systems, like respiratory infection, endothelial infection leading to vasculitis, and terminal effects on the CNS. Symptoms of NiV begins with the entry of the virus by oronasal route followed by homing itself in the bronchiole epithelial cells, occasionally in the alveoli, and later in other respiratory tissues [45]. Individuals with respiratory symptoms have a higher likelihood of transmitting NiV, particularly in the NiV-B genotype, which facilitates human-to-human transmission. Histopathological examination of NiV-infected lungs reveals changes like necrotizing alveolitis, pulmonary edema, aspiration pneumonia, and the presence of multinucleated cells in alveolar regions [46].
The spread of virus from the respiratory epithelium to the endothelial cells of various organs, which serve as secondary sites for replication after initial viremia. The distribution of EFNB2/B3 in arterial endothelium provides a favourable conditions for broad dissemination of NiV through the bloodstream, leading to systemic vasculitis and to the brain, spleen, and kidneys [47]. Autopsy findings reveal extensive involvement of blood vessels in the CNS, lungs, heart, and kidneys, causing systemic vasculitis, necrosis, and extensive thrombosis. The CNS arteries exhibit syncytial or multinucleated large endothelial cells, and the damage to microvascular endothelial cells manifests as multifocal encephalitis [46].
In later stages, NiV induces encephalitis in infected individuals, with entry into the CNS occurring through two main processes: the haematogenous route (via the choroid plexus) and/or the anterograde route through olfactory nerves [46]. Additionally, reports suggest NiV may enter the CNS through circulating immune cells, particularly dendritic cells expressing CD169 marker [47]. The infection disrupts the blood-brain barrier, leading to the release of proinflammatory cytokines, IL-1β and TNF-α, causing neurological symptoms. CNS infection manifests as vasculitis, thrombosis, parenchymal necrosis, and viral inclusion bodies [48]. Both grey and white matter display vascular involvement, inflammation, and focal lesions, especially in the sub cortical and deep white matter of cerebral hemispheres [49]. Recent studies on pigs and hamsters indicate that NiV can enter the CNS via the olfactory nerve, infecting the olfactory epithelium and spreading to various regions [52].
Immune responses in humans are more advanced and employ both humoral and cell-mediated immunity. The immune response to NiV infection was effectively described in survivors from the 2018 NiV outbreak in India. Serum analysis revealed the prompt generation of NiV-specific IgG and IgM antibodies within a week of exposure, leading to the clearance of NiV from the blood. Elevated B lymphocyte counts correlated with the production of NiV-specific antibodies [37]. Similar humoral immune responses were observed in experimentally infected swine [58] and African green monkeys [59], where the animals developed neutralizing antibodies (IgM/IgG) and B cell activation.
Literature on cell-mediated immune responses to NiV in humans is limited, primarily due to constraints such as small sample sizes, insufficient coverage of disease progression, and a lack of samples from fatal cases. However, a study on survivors of the 2018 Kerala outbreak documented the T-cell response to NiV, highlighting the activation of CD8+ T lymphocytes, which played a role in the clearance of NiV from the serum. Consequently there was an elevation of Ki67+, a subset of CD8+ T cells, causing increase in granzyme B, and PD-1 [37]. Experimental research on swine and African green monkey models provided insights into cell-mediated immune responses, including the upregulation of CD25 on memory cells and Th cells in swine [58], and an increase in CD8+ T-cell numbers in African green monkeys [60]. These findings suggest that cell-mediated immune responses, particularly involving CD8+ T cells, play a crucial role in combating NiV infection.
Cytokines play a crucial role in the immune response against NiV, contributing significantly to antiviral activity. During NiV infection, various inflammatory cytokines are triggered at different stages and sites in the host, potentially exacerbating clinical symptoms and increasing vascular permeability, which facilitates viral dissemination [60]. The NiV RNA activates cytoplasmic RNA helicases, preventing downstream signalling and activation of the IFNβ promoter in the IFN-I system [61]. NiV-infected endothelial cells produce IFNβ, along with chemokines (such as CXCL10 or IP-10), interleukin-6 (IL-6), ISG56, and OAS1 [62]. CXCL10 attracts activated T lymphocytes, and IL-6 functions as an inflammatory molecule stimulating acute-phase proteins. The expression of CXCL10 mRNA closely correlates with NiV replication, detected in the brain of NiV-infected golden hamsters and brain epithelial cells during the Malaysia NiV outbreak, suggesting its role in NiV-associated encephalitis .Lethal NiV Infection Induces Rapid Over-expression of CXCL10 [63].
NiV causes the release of inflammatory cytokines, such as IL-1α, IL-6, IL-8, granulocyte colony-stimulating factor, granulocyte-macrophage colony-stimulating factor, and monocyte chemoattractant protein-1 (MCP-1), from the infected respiratory epithelium, contributing to Acute respiratory distress syndrome [50]. The secreted cytokines perform functions like; IL-6 plays a role in dendritic cell maturation [64], IL-8 facilitates granulocyte chemotaxis [64], and MCP-1 helps regulate the blood-brain barrier [66]. These cytokines, along with CXCL10, stimulates the production of monocytes and T cell migration to the infection site [67]. The appearance of TNF-α and IL-1β in the brain coincides with the initial signs of NiV infection, and their pro-inflammatory effects compromise the blood-brain barrier integrity, contributing to neurological impairments observed in NiV-infected patients [68].
Different methods have been employed for the diagnosis of NiV infection. Early-stage diagnosis is feasible through RT-PCR tests on various samples, including throat, nasal passage, urine, cerebrospinal fluid, and blood. RT-PCR for NiV was first used in 2004, and specifically targeted in amplifying the N gene sequence [75]. Enzyme-linked immunosorbent assay (ELISA) is a simple technique to identify NiV, and involves detection antibodies IgG/IgM [76], and a variant technique of sandwich ELISA using rabbit polyclonal antibodies against the NiV G protein [77]. The WHO recommends PCR as the most sensitive diagnostic method, with NiV-specific IgM ELISA as an alternative serological approach. However, ELISA, while reliable, exhibits lower sensitivity and specificity compared to molecular detection. Additional diagnostic methods compriseof nucleic acid amplification, sequencing, immunofluorescence assay, histopathology, virus isolation, viral neutralization test, and high-throughput techniques for whole-genome sequencing [78, 79].
The primary approach to treating NiV infection involves providing supportive care, which includes ensuring rest, hydration, and addressing the symptoms of acute encephalitis syndrome. The fundamental treatment strategy involves maintaining an open airway, preventing venous thrombosis, and restoring balance in fluid and electrolytes [80]. Several substances have been tested in the pursuit of a drug that can hinder the proliferation of NiV. Though ribavirin, which is effective against respiratory syncytial virus, was administered to 140 patients during the Malaysian outbreak of 1998, the efficacy of ribavirin is a matter of debate. Chong
The morbidity and mortality faced by healthcare workers (HCWs) in the care of patients with NiV necessitate clear guidelines based on existing evidence and available resources [11]. Drawing from the successful containment of Ebola and SARS, the importance of standard precautions, hand hygiene, and personal protective equipment (PPE) are essential components of a comprehensive infection prevention and control strategy [88]. All hospitals are required to adhere to standard infection control precautions, with additional measures such as droplet precautions that relies on isolation (one-patient isolation rooms or cohorting), contact and airborne precautions in the event of NiV infection. Additionally, proper patient isolation, infection control precautions, and triage procedures are crucial, and hospitals in at-risk areas need to be well-prepared for Nipah cases. The importance of regional action plans, policies, and strategies for NiV prevention and control in South and South East Asia is also emphasized [35]. Implementation of endorsed action plans and public health awareness through various media, including social platforms, television, radio, and printed materials as part of public health announcement is crucial [80]. Specific preventive measures for farm workers and villagers are high-lighted, including avoiding direct contact with animals and refraining from consuming potentially contaminated date palm products [68]. More emphasis on hand hygiene like washing hands with soap/water and/or using alcohol-based hand sanitizer is important. The utilization of appropriate PPE during patient examinations is recommended to prevent infections among HCWs, with a focus on proper PPE removal procedures to miti-gate risks associated with NiV exposure [89].
NiV is recognized as an emerging pathogen, causing zoonotic outbreaks with high mortality rates. Following the initial documented NiV outbreak in humans, the virus has persisted in causing repeated outbreaks in many Southeast Asian countries, emphasizing the ongoing risk to human and animal health. Bats, the natural reservoirs, are implicated in viral transmission to humans and animals, posing a global threat due to the widespread distribution of bats. Addressing this challenge necessitates a comprehensive approach involving preventive and therapeutic measures. Recent efforts have been directed toward studying host-reservoir immunology, although a definitive understanding of the host-pathogen interaction in the natural host is still lacking. Essential tools, including host-specific cell lines and high-throughput sequencing, are required to advance our comprehension of these interactions. On the opposite side of the transmission cycle, comprehending the protective factors in dead-end hosts, such as humans, is critical for devising effective preventive and therapeutic approaches against NiV infection. Positive outcomes from vaccine and antibody treatment experiments in animal models underscore the significance of neutralizing antibodies for protection. Investigating the exact mechanisms of protection in these studies may yield valuable insights into the disease process. Identifying aspects of the immune response that are deficient or counterproductive in human NiV infection could open avenues for targeted interventions to modulate the immune response, potentially enhancing survival rates.
One health approach is a way in changing the environmental factors in controlling the infectious disease which affects not only the humans but also the non-humans. Many international agencies like Food and Agricultural Organisation, World Organisation for Animal Health and World Health Organisation has well acknowledged that a key component of disease control and prevention efforts is the One Health concept [90]. The transmission of NiV occurs more than one species, one health approach is utmost important with the involvement of scientist from various sectors to see the best result [91].
The virus was just added to the WHO's list of emerging pathogens of priority. Currently there is no vaccination or approved treatment exists for NiV. Many scientific laboratories are focusing on the potential vaccinations being researched and developed (Table 1). Most of them focus on the G and F proteins found on the virus's surface, which are essential for it to penetrate human cells and proliferate throughout the body. The researchers at the Vaccine Research Institute of the ANRS MIE/ Inserm (VRI) concentrated on the critical function that antigen-presenting cells (APCs) play in the establishment of protective responses in order to design their new vaccine. Specific portions of the surface proteins of the Bangladesh strain of the NiV-B virus are carried by the potential vaccine, known as CD40.NiV [92]. United Kingdom started the first vaccination trial against Nipah Virus. Vaccine named ChAdOx1 Nipah B was developed by the Scientist in the Oxford University [93].
Table 1 . Vaccines to combat NiV in clinical trials.
S. No | Vaccine | Platform | Clinical trials |
---|---|---|---|
1 | ChAdOx1-developed by University of Oxford | Viral vector based vaccine | Phase I [93] |
2 | Auro Vaccines + PATH | Protein based vaccine | Phase I [93] |
3 | PHV | Viral vector based vaccine | Phase I [94] |
4 | mRNA-1215 developed by Moderna | mRNA based vaccine | Phase I [95] |
5 | CD40.NiV | Protein based vaccine | Pre clinical trials [92] |
6 | HeV-sG-V | Glycoprotein vaccine | Phase I [96] |
7 | M102.4 | Monoclonal antibody | Phase I [96] |
In conclusion, NiV stands as an emerging zoonotic pathogen with significant implications for global health. Despite its relatively low frequency of outbreaks, the severity of NiV infections, including high mortality rates and potential for person-to-person transmission, under-scores the need for comprehensive research, preventive measures, and therapeutic interventions. The virus, primarily transmitted by the natural reservoirs,
The authors acknowledge the Central research laboratory, Sree Balaji Medical College and Hospital for their support.
Dr.Jaiganeshan involved in the data collection, manuscript preparation and analysis of data. Dr.Lakshmi. K involved in the designing, supervising of the work and editing the final manuscript. All authors have made a substantial, direct, and intellectual contribution to the manuscript and approved it for publication.
The authors have no financial conflicts of interest to declare.
Poonam Kanojiya, Rajashri Banerji, and Sunil D. Saroj*
Microbiol. Biotechnol. Lett. 2022; 50(1): 1-14 https://doi.org/10.48022/mbl.2111.11012